Variant report

Variant	rs1900542
Chromosome Location	chr2:167396387-167396388
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11679527	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12473185	0.85[EUR][1000 genomes]
rs12998446	0.90[AMR][1000 genomes]
rs13019091	0.84[ASN][1000 genomes]
rs1447223	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1447224	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34161656	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4428025	0.87[ASN][1000 genomes]
rs6432920	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6714497	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6724571	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67300634	0.91[EUR][1000 genomes]
rs7422259	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532474	chr2:166993501-167548531	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752480	chr2:167163493-167567493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167395600-167396400	Enhancers	Fetal Lung	lung
2	chr2:167395800-167396400	Enhancers	NHLF	lung
3	chr2:167396000-167396400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:167396000-167396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:167396000-167396400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:167396000-167396400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:167396000-167396600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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