Variant report

Variant	rs1900625
Chromosome Location	chr3:134490566-134490567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1374813	0.82[ASN][1000 genomes]
rs4955451	0.82[ASN][1000 genomes]
rs4955487	0.82[ASN][1000 genomes]
rs4955490	0.82[ASN][1000 genomes]
rs4955492	0.82[ASN][1000 genomes]
rs4955493	0.82[ASN][1000 genomes]
rs4955494	0.82[ASN][1000 genomes]
rs6439517	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs720363	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs935511	0.82[ASN][1000 genomes]
rs9825708	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9825801	0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9828197	0.82[ASN][1000 genomes]
rs9840936	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9875834	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134488000-134492000	Weak transcription	Fetal Heart	heart
2	chr3:134488800-134490800	Weak transcription	Psoas Muscle	Psoas
3	chr3:134489800-134490800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134490400-134491600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:134490400-134492400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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