Variant report

Variant	rs1900769
Chromosome Location	chr2:177486886-177486887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12693099	1.00[ASN][1000 genomes]
rs12991840	1.00[ASN][1000 genomes]
rs12996258	1.00[ASN][1000 genomes]
rs12998936	1.00[ASN][1000 genomes]
rs13006344	1.00[ASN][1000 genomes]
rs13030550	1.00[ASN][1000 genomes]
rs1545398	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62174179	1.00[ASN][1000 genomes]
rs713285	1.00[ASN][1000 genomes]
rs72928334	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177478800-177491600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:177479200-177493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:177483400-177487200	Enhancers	Fetal Heart	heart
4	chr2:177486400-177501200	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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