Variant report

Variant	rs72928334
Chromosome Location	chr2:177500506-177500507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
LINC01117	TF binding region
ENSG00000163364	Chromatin interaction
ENSG00000128652	Chromatin interaction
ENSG00000224577	Chromatin interaction
ENSG00000237380	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1545398	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900769	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2594947	0.82[EUR][1000 genomes]
rs2594950	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177486400-177501200	Weak transcription	Ovary	ovary
2	chr2:177493400-177501200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:177493600-177500600	Weak transcription	HUVEC	blood vessel
4	chr2:177496800-177501200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:177496800-177501400	Weak transcription	A549	lung
6	chr2:177497000-177501800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:177499200-177501000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:177499400-177501600	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:177499600-177500800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:177499800-177501000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:177500000-177500600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:177500000-177502000	Bivalent/Poised TSS	Fetal Kidney	kidney
13	chr2:177500400-177501200	Weak transcription	NHDF-Ad	bronchial
14	chr2:177500400-177501200	Weak transcription	Osteobl	bone
15	chr2:177500400-177502000	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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