Variant report

Variant	rs1900861
Chromosome Location	chr3:158925636-158925637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158924022..158926235-chr3:158926252..158928979,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12635142	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1375407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1449027	0.83[CHB][hapmap]
rs1562672	0.82[CHB][hapmap]
rs17795566	0.83[CHB][hapmap]
rs1823310	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975601	0.82[CHB][hapmap]
rs2365478	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2595232	0.83[CHB][hapmap]
rs2595236	0.83[CHB][hapmap]
rs2595242	0.82[CHB][hapmap]
rs2595243	0.82[CHB][hapmap]
rs2595244	0.82[CHB][hapmap]
rs2595246	0.81[CHB][hapmap]
rs2595258	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2595263	0.84[ASN][1000 genomes]
rs2621277	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2621284	0.82[CHB][hapmap]
rs2621292	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs2621294	0.83[CHB][hapmap]
rs2621295	0.83[CHB][hapmap]
rs2621297	0.82[CHB][hapmap]
rs2621299	0.83[CHB][hapmap]
rs2621300	0.82[CHB][hapmap]
rs2621306	0.82[CHB][hapmap]
rs4020070	0.88[ASN][1000 genomes]
rs4296631	0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4501157	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4645169	0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4680494	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4680495	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6768725	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789496	1.00[JPT][hapmap]
rs6805303	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7634829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848481	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9879667	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158924800-158926400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:158925000-158926000	Enhancers	Dnd41	blood
3	chr3:158925200-158928000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:158925600-158926200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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