Variant report

Variant	rs2595258
Chromosome Location	chr3:158934353-158934354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12635142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1375407	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.94[ASN][1000 genomes]
rs1448998	0.84[GIH][hapmap]
rs1449027	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1562672	0.91[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17795566	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs1823310	0.95[ASN][1000 genomes]
rs1900861	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1975601	0.91[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2365478	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2595232	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2595236	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2595238	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2595239	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2595242	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs2595243	0.85[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs2595244	0.91[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.80[YRI][hapmap]
rs2595245	0.85[CEU][hapmap];0.87[CHB][hapmap];0.80[YRI][hapmap]
rs2595246	0.81[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap]
rs2595247	0.85[CEU][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes]
rs2595248	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs2595263	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2621277	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2621280	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2621282	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2621284	0.87[CHB][hapmap]
rs2621290	0.81[CEU][hapmap]
rs2621292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2621294	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2621295	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2621297	0.91[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap]
rs2621299	0.85[CEU][hapmap];0.87[CHB][hapmap];0.80[YRI][hapmap]
rs2621300	0.85[CEU][hapmap];0.86[CHB][hapmap];0.80[YRI][hapmap]
rs2621306	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs2621310	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.90[MEX][hapmap]
rs2621312	0.89[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap]
rs2621313	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2621314	0.82[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap]
rs35192832	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4020070	0.84[ASN][1000 genomes]
rs4296631	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4501157	0.91[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4645169	0.86[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4680494	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4680495	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4680500	0.86[GIH][hapmap]
rs6768725	0.95[ASN][1000 genomes]
rs6789496	0.95[JPT][hapmap]
rs6805303	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6807076	0.86[GIH][hapmap]
rs73166218	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7634829	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7646959	0.86[GIH][hapmap]
rs7649056	0.86[GIH][hapmap]
rs9848481	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs9879667	0.84[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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