Variant report

Variant	rs2621280
Chromosome Location	chr3:158996712-158996713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1449027	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1562672	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1975601	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2595232	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2595236	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2595238	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2595239	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2595243	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2595247	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2595248	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2595250	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2595263	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2621282	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2621290	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2621294	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2621295	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2621310	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2621313	0.83[EUR][1000 genomes]
rs2621314	0.83[EUR][1000 genomes]
rs35192832	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73166218	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158992000-158998200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:158995000-158997800	Weak transcription	Fetal Brain Male	brain
3	chr3:158995400-158997800	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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