Variant report
| Variant | rs2595250 |
|---|---|
| Chromosome Location | chr3:159021898-159021899 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1449027 | 0.80[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1562672 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1975601 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2595232 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2595236 | 0.80[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2595238 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2595239 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2595242 | 0.93[ASN][1000 genomes] |
| rs2595243 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2595247 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2595248 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2621280 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2621282 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2621284 | 0.92[ASN][1000 genomes] |
| rs2621290 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2621294 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2621295 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2621306 | 0.89[ASN][1000 genomes] |
| rs2621310 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2621313 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2621314 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35192832 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73166218 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012602 | chr3:158800182-159031618 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159021200-159022400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr3:159021800-159023200 | Enhancers | Fetal Brain Male | brain |
