Variant report

Variant	rs1900908
Chromosome Location	chr3:100710996-100710997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12497675	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630679	0.84[AMR][1000 genomes]
rs1449311	0.92[AMR][1000 genomes]
rs1529955	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1551040	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1972991	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2576368	0.91[JPT][hapmap]
rs2873446	0.82[AMR][1000 genomes]
rs7611522	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9290276	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9883684	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100692600-100711200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100700400-100711200	Weak transcription	Esophagus	oesophagus
3	chr3:100701800-100711000	Weak transcription	Aorta	Aorta
4	chr3:100702200-100711000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:100707200-100711200	Weak transcription	Gastric	stomach
6	chr3:100707200-100711200	Weak transcription	Lung	lung
7	chr3:100708600-100711000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:100709000-100712600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:100709200-100713000	Active TSS	Stomach Smooth Muscle	stomach
10	chr3:100709600-100711600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:100709600-100712400	Active TSS	HSMMtube	muscle
12	chr3:100709800-100711600	Active TSS	Osteobl	bone
13	chr3:100709800-100712400	Active TSS	Fetal Muscle Leg	muscle
14	chr3:100709800-100712400	Active TSS	NHDF-Ad	bronchial
15	chr3:100709800-100712600	Active TSS	Muscle Satellite Cultured Cells	--
16	chr3:100709800-100712600	Active TSS	Fetal Stomach	stomach
17	chr3:100710000-100712800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:100710000-100712800	Active TSS	Fetal Lung	lung
19	chr3:100710200-100712200	Active TSS	Right Atrium	heart
20	chr3:100710200-100712400	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr3:100710200-100712600	Active TSS	Fetal Muscle Trunk	muscle
22	chr3:100710400-100711000	Weak transcription	HSMM	muscle
23	chr3:100710400-100712400	Active TSS	Colon Smooth Muscle	Colon
24	chr3:100710400-100712400	Active TSS	NHLF	lung
25	chr3:100710400-100712800	Active TSS	Rectal Smooth Muscle	rectum
26	chr3:100710600-100711000	Enhancers	NHEK	skin
27	chr3:100710600-100711600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:100710600-100712400	Active TSS	Ovary	ovary
29	chr3:100710600-100712400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr3:100710600-100712600	Active TSS	Fetal Intestine Large	intestine
31	chr3:100710800-100711000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:100710800-100711000	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr3:100710800-100711000	Enhancers	A549	lung
34	chr3:100710800-100711200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:100710800-100711400	Active TSS	HUVEC	blood vessel
36	chr3:100710800-100711600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:100710800-100711800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:100710800-100711800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
39	chr3:100710800-100712200	Active TSS	Duodenum Mucosa	Duodenum
40	chr3:100710800-100712400	Active TSS	Fetal Intestine Small	intestine
41	chr3:100710800-100712400	Active TSS	Skeletal Muscle Female	skeletal muscle

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