Variant report

Variant	rs9290276
Chromosome Location	chr3:100735631-100735632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10936494	0.83[EUR][1000 genomes]
rs12497675	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12630437	0.83[EUR][1000 genomes]
rs12630679	0.86[YRI][hapmap];0.88[AMR][1000 genomes]
rs12632186	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1449311	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1449319	0.83[EUR][1000 genomes]
rs1529955	0.92[ASW][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap]
rs1551040	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1839297	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1900908	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1972991	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2576368	0.91[JPT][hapmap]
rs2713757	0.82[JPT][hapmap]
rs4568178	0.83[EUR][1000 genomes]
rs4928108	0.83[EUR][1000 genomes]
rs7611522	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9883684	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100730000-100745800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:100730600-100735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:100735200-100735800	Enhancers	Colon Smooth Muscle	Colon
4	chr3:100735200-100735800	Enhancers	HUVEC	blood vessel
5	chr3:100735200-100735800	Enhancers	Osteobl	bone
6	chr3:100735400-100735800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:100735400-100735800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:100735400-100736000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:100735400-100736000	Enhancers	Fetal Stomach	stomach
10	chr3:100735400-100736000	Enhancers	HMEC	breast
11	chr3:100735400-100736400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:100735400-100736400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:100735400-100736400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:100735400-100736600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:100735600-100735800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:100735600-100735800	Flanking Active TSS	Ovary	ovary
17	chr3:100735600-100736000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:100735600-100736200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:100735600-100736400	Enhancers	NHDF-Ad	bronchial
20	chr3:100735600-100736400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links