Variant report

Variant	rs1901619
Chromosome Location	chr1:215226265-215226266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10494989	0.83[YRI][hapmap]
rs10779633	0.84[YRI][hapmap]
rs11120475	1.00[AMR][1000 genomes]
rs1377173	0.83[YRI][hapmap]
rs1452608	0.84[YRI][hapmap]
rs1452609	0.84[YRI][hapmap]
rs1452610	0.84[YRI][hapmap]
rs2262937	0.84[YRI][hapmap]
rs2601607	0.83[YRI][hapmap]
rs2601608	0.83[YRI][hapmap]
rs2601609	0.84[YRI][hapmap]
rs2601610	0.84[YRI][hapmap]
rs2601612	0.83[YRI][hapmap]
rs2601613	0.84[YRI][hapmap]
rs2601614	0.83[YRI][hapmap]
rs2601618	0.83[YRI][hapmap]
rs2601621	0.83[YRI][hapmap]
rs2601624	0.83[YRI][hapmap]
rs2601625	0.83[YRI][hapmap]
rs2601636	0.84[YRI][hapmap]
rs2601638	0.84[YRI][hapmap]
rs2601640	0.83[YRI][hapmap]
rs2601641	0.84[YRI][hapmap]
rs2802643	0.84[YRI][hapmap]
rs2802644	0.83[YRI][hapmap]
rs2802649	0.83[YRI][hapmap]
rs2841575	0.83[YRI][hapmap]
rs2841597	0.84[YRI][hapmap]
rs2841598	0.83[YRI][hapmap]
rs2841599	0.84[YRI][hapmap]
rs2841604	0.84[YRI][hapmap]
rs2841606	0.84[YRI][hapmap]
rs2841607	0.84[YRI][hapmap]
rs2841608	0.83[YRI][hapmap]
rs2841609	0.83[YRI][hapmap]
rs2841611	0.84[YRI][hapmap]
rs2841613	0.84[YRI][hapmap]
rs2841615	1.00[YRI][hapmap]
rs57753506	0.83[AMR][1000 genomes]
rs61223747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140864	1.00[AMR][1000 genomes]
rs74140869	1.00[AMR][1000 genomes]
rs74143603	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215221200-215227600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:215222800-215242200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:215225000-215227000	Enhancers	NHDF-Ad	bronchial
4	chr1:215225400-215226800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215225400-215226800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:215225600-215226600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:215225600-215227200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:215225600-215229000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:215225800-215226800	Enhancers	Osteobl	bone
10	chr1:215226200-215226600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:215226200-215226600	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links