Variant report

Variant	rs2841615
Chromosome Location	chr1:215222115-215222116
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10494989	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs10494991	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10494992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10779633	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs10779634	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10779635	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12026832	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12028008	0.83[MEX][hapmap]
rs12141327	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1377173	0.91[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs1377175	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1377177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1452608	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs1452609	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs1452610	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs1452620	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1584759	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584760	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1597847	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs17024148	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1901619	1.00[YRI][hapmap]
rs2123331	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2262937	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601607	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601608	0.83[YRI][hapmap]
rs2601609	0.86[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs2601610	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601611	0.92[ASN][1000 genomes]
rs2601612	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601613	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs2601614	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601615	0.92[ASN][1000 genomes]
rs2601616	0.92[ASN][1000 genomes]
rs2601617	0.91[ASN][1000 genomes]
rs2601618	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601619	0.91[ASN][1000 genomes]
rs2601620	0.92[ASN][1000 genomes]
rs2601621	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes]
rs2601622	0.92[ASN][1000 genomes]
rs2601623	0.92[ASN][1000 genomes]
rs2601624	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601625	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs2601634	0.81[ASN][1000 genomes]
rs2601636	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601638	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601639	0.92[ASN][1000 genomes]
rs2601640	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601641	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2601646	0.87[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2601650	0.98[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2802642	0.92[ASN][1000 genomes]
rs2802643	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2802644	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2802649	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs2802650	0.92[ASN][1000 genomes]
rs2802651	0.92[ASN][1000 genomes]
rs2802657	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2841574	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2841575	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs2841577	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2841581	0.96[ASN][1000 genomes]
rs2841587	0.96[ASN][1000 genomes]
rs2841591	0.94[ASN][1000 genomes]
rs2841592	0.94[ASN][1000 genomes]
rs2841595	0.87[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2841596	0.92[ASN][1000 genomes]
rs2841597	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841598	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841599	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841600	0.92[ASN][1000 genomes]
rs2841601	0.92[ASN][1000 genomes]
rs2841602	0.92[ASN][1000 genomes]
rs2841604	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841605	0.92[ASN][1000 genomes]
rs2841606	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841607	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841608	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841609	0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841610	0.83[CHB][hapmap];0.92[ASN][1000 genomes]
rs2841611	0.86[CHB][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs2841612	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2841613	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs2841616	0.83[ASN][1000 genomes]
rs2841621	0.81[ASN][1000 genomes]
rs2841622	0.81[ASN][1000 genomes]
rs4294386	0.92[ASN][1000 genomes]
rs4339836	0.92[ASN][1000 genomes]
rs4348692	0.92[ASN][1000 genomes]
rs4356023	0.92[ASN][1000 genomes]
rs61820010	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2841615	SYT14	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215220200-215225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215220600-215225000	Weak transcription	NHDF-Ad	bronchial
3	chr1:215221200-215227600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:215222000-215222400	ZNF genes & repeats	Osteobl	bone
5	chr1:215222000-215222800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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