Variant report

Variant	rs1377177
Chromosome Location	chr1:215221273-215221274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10494989	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10494991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494993	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10779633	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs10779634	0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10779635	0.85[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12026832	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12141327	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1377173	0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1377175	0.85[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1452608	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1452609	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1452610	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1452620	0.89[ASN][1000 genomes]
rs1584759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1584760	0.95[ASN][1000 genomes]
rs1597847	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17024148	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1869201	0.81[ASN][1000 genomes]
rs2123331	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2262937	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601607	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601609	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2601610	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601611	0.90[ASN][1000 genomes]
rs2601612	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601613	0.92[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2601614	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601615	0.90[ASN][1000 genomes]
rs2601616	0.90[ASN][1000 genomes]
rs2601617	0.89[ASN][1000 genomes]
rs2601618	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601619	0.89[ASN][1000 genomes]
rs2601620	0.90[ASN][1000 genomes]
rs2601621	0.92[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2601622	0.90[ASN][1000 genomes]
rs2601623	0.90[ASN][1000 genomes]
rs2601624	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601625	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2601636	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601638	0.92[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601639	0.90[ASN][1000 genomes]
rs2601640	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601641	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601646	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2601650	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2802642	0.90[ASN][1000 genomes]
rs2802643	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2802644	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2802649	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2802650	0.90[ASN][1000 genomes]
rs2802651	0.90[ASN][1000 genomes]
rs2802657	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2841574	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2841575	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2841577	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2841581	0.94[ASN][1000 genomes]
rs2841587	0.94[ASN][1000 genomes]
rs2841591	0.92[ASN][1000 genomes]
rs2841592	0.92[ASN][1000 genomes]
rs2841595	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841596	0.90[ASN][1000 genomes]
rs2841597	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841598	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841599	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841600	0.90[ASN][1000 genomes]
rs2841601	0.90[ASN][1000 genomes]
rs2841602	0.90[ASN][1000 genomes]
rs2841604	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841605	0.90[ASN][1000 genomes]
rs2841606	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841607	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841608	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841609	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841610	0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs2841611	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs2841612	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841613	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2841615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2841616	0.81[ASN][1000 genomes]
rs4294386	0.90[ASN][1000 genomes]
rs4339836	0.90[ASN][1000 genomes]
rs4348692	0.90[ASN][1000 genomes]
rs4356023	0.90[ASN][1000 genomes]
rs4655388	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61820010	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215216200-215222000	Weak transcription	Osteobl	bone
2	chr1:215220200-215225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215220600-215225000	Weak transcription	NHDF-Ad	bronchial
4	chr1:215220800-215221800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:215221200-215227600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links