Variant report

Variant	rs1901910
Chromosome Location	chr2:30889475-30889476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30888632..30891581-chr2:30909375..30911478,2	MCF-7	breast:
2	chr2:30885089..30887091-chr2:30887227..30889591,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10207451	0.83[ASN][1000 genomes]
rs1031236	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11127283	1.00[ASN][1000 genomes]
rs12994945	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12997116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013282	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869427	1.00[ASN][1000 genomes]
rs2028961	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2363078	1.00[ASN][1000 genomes]
rs34585086	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34658981	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35148876	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4372952	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62142162	1.00[ASN][1000 genomes]
rs62142164	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142172	0.82[AFR][1000 genomes]
rs6713112	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743856	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71444466	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30882800-30889600	Enhancers	Fetal Muscle Leg	muscle
2	chr2:30883600-30890400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:30884400-30890000	Enhancers	NHDF-Ad	bronchial
4	chr2:30884600-30889600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:30886200-30889600	Enhancers	HMEC	breast
6	chr2:30886800-30889600	Enhancers	HSMM	muscle
7	chr2:30886800-30890000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:30887200-30889600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:30887800-30889800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:30888200-30889600	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:30888200-30889800	Enhancers	Colon Smooth Muscle	Colon
12	chr2:30888200-30889800	Enhancers	HUVEC	blood vessel
13	chr2:30888400-30890400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:30888800-30889600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:30888800-30889600	ZNF genes & repeats	Fetal Stomach	stomach
16	chr2:30888800-30889600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr2:30889000-30889600	Flanking Active TSS	A549	lung
18	chr2:30889000-30889600	Enhancers	HepG2	liver
19	chr2:30889000-30889800	ZNF genes & repeats	GM12878-XiMat	blood
20	chr2:30889000-30902200	Weak transcription	Gastric	stomach
21	chr2:30889200-30889600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:30889200-30889800	Enhancers	K562	blood
23	chr2:30889200-30892400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:30889400-30889600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:30889400-30889600	Enhancers	HSMMtube	muscle
26	chr2:30889400-30889600	Flanking Active TSS	NHEK	skin
27	chr2:30889400-30889600	Flanking Active TSS	Osteobl	bone
28	chr2:30889400-30890000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:30889400-30890000	Enhancers	NH-A	brain
30	chr2:30889400-30890200	Enhancers	Hela-S3	cervix
31	chr2:30889400-30892200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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