Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:30907737..30909883-chr2:30930032..30931732,2	MCF-7	breast:
2	chr2:30436165..30437868-chr2:30906721..30909084,2	K562	blood:
3	chr2:30906815..30908445-chr2:30910356..30912110,2	K562	blood:
4	chr2:30883787..30887664-chr2:30907085..30909413,4	K562	blood:
5	chr2:30903114..30906035-chr2:30906573..30909235,2	MCF-7	breast:
6	chr2:30884154..30887664-chr2:30907085..30910556,4	K562	blood:
7	chr2:30906022..30908315-chr2:30910328..30911856,2	K562	blood:
8	chr2:30907810..30910033-chr2:30912407..30915390,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10180872	1.00[JPT][hapmap]
rs10203381	1.00[JPT][hapmap]
rs10207070	1.00[JPT][hapmap]
rs1026066	1.00[JPT][hapmap]
rs11127283	0.86[ASN][1000 genomes]
rs12994945	0.85[AMR][1000 genomes]
rs12997116	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13013282	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13429099	1.00[JPT][hapmap]
rs13430761	1.00[JPT][hapmap]
rs1869427	0.86[ASN][1000 genomes]
rs1901910	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2028961	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2363078	0.86[ASN][1000 genomes]
rs34585086	0.85[AMR][1000 genomes]
rs34658981	0.85[AMR][1000 genomes]
rs35148876	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4372952	0.85[AMR][1000 genomes]
rs62142162	0.86[ASN][1000 genomes]
rs62142164	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62142172	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6713112	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6743856	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30897400-30909600	Weak transcription	Aorta	Aorta
2	chr2:30902400-30954000	Weak transcription	Gastric	stomach
3	chr2:30902600-30912000	Weak transcription	Spleen	Spleen
4	chr2:30902600-30915600	Weak transcription	NHDF-Ad	bronchial
5	chr2:30906200-30909000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:30907000-30909800	Enhancers	Fetal Muscle Leg	muscle
7	chr2:30907200-30908600	Enhancers	Fetal Brain Male	brain
8	chr2:30907200-30911600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:30908000-30911200	Weak transcription	Fetal Lung	lung
10	chr2:30908200-30911200	Weak transcription	Fetal Brain Female	brain
11	chr2:30908200-30912400	Weak transcription	Primary B cells from cord blood	blood
12	chr2:30908200-30915600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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