Variant report

Variant	rs190240584
Chromosome Location	chr6:36475839-36475840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36474397..36477191-chr6:36544292..36546123,2	MCF-7	breast:
2	chr6:36474628..36477147-chr6:36484775..36487210,3	K562	blood:
3	chr6:36470331..36472950-chr6:36474034..36477426,3	K562	blood:
4	chr6:36409564..36413749-chr6:36473812..36477926,5	K562	blood:
5	chr6:36470157..36472950-chr6:36474808..36477426,3	K562	blood:
6	chr6:36472144..36476208-chr6:36480337..36484283,3	MCF-7	breast:
7	chr6:36464672..36468540-chr6:36473344..36476121,3	K562	blood:
8	chr6:36475084..36480133-chr6:36561035..36564418,5	MCF-7	breast:
9	chr6:36410776..36413749-chr6:36473812..36476738,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv5260	chr6:36471464-36516119	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3367342	chr6:36475647-36475924	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:36437800-36477600	Strong transcription	Fetal Thymus	thymus
4	chr6:36447200-36477600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:36447400-36477800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:36450000-36479800	Weak transcription	Stomach Mucosa	stomach
7	chr6:36455200-36476400	Weak transcription	Pancreas	Pancrea
8	chr6:36456400-36512600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:36457400-36484400	Weak transcription	Right Atrium	heart
10	chr6:36461400-36481400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:36461600-36476400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:36462200-36477800	Strong transcription	Primary hematopoietic stem cells	blood
13	chr6:36462600-36477400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:36463000-36507200	Weak transcription	Fetal Brain Male	brain
15	chr6:36463600-36476400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:36463600-36493600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:36463800-36478000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:36463800-36493400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:36463800-36513600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:36464200-36477600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:36465200-36477800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:36465400-36477400	Weak transcription	NHEK	skin
23	chr6:36465400-36477600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:36465400-36477600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:36465600-36489800	Weak transcription	Psoas Muscle	Psoas
26	chr6:36467400-36476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:36467800-36476400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:36467800-36477800	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:36467800-36479800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:36468000-36476400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:36468000-36476400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:36468000-36476400	Weak transcription	Esophagus	oesophagus
33	chr6:36468000-36476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:36468000-36476400	Weak transcription	Fetal Brain Female	brain
35	chr6:36468000-36476400	Weak transcription	Gastric	stomach
36	chr6:36468000-36476400	Weak transcription	Lung	lung
37	chr6:36468000-36476400	Weak transcription	Ovary	ovary
38	chr6:36468000-36476400	Weak transcription	NHLF	lung
39	chr6:36468000-36476600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:36468000-36477600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:36468000-36482400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:36468000-36487000	Weak transcription	Aorta	Aorta
43	chr6:36469000-36482400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:36469400-36477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:36469400-36477200	Strong transcription	Primary B cells from cord blood	blood
46	chr6:36469600-36476400	Weak transcription	Fetal Stomach	stomach
47	chr6:36469600-36479000	Strong transcription	HSMM	muscle
48	chr6:36470400-36476000	Enhancers	Fetal Intestine Small	intestine
49	chr6:36470400-36477600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:36470400-36480400	Strong transcription	Fetal Lung	lung

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