Variant report

Variant	rs1903765
Chromosome Location	chr3:119743122-119743123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119736409..119738702-chr3:119741738..119744184,2	MCF-7	breast:
2	chr3:119741634..119743894-chr3:119814255..119816280,3	K562	blood:
3	chr3:119742589..119744639-chr3:119769517..119771054,2	MCF-7	breast:
4	chr3:119736524..119739259-chr3:119742014..119746399,5	K562	blood:

Variant related genes	Relation type
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1154595	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630592	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13321783	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[ASN][1000 genomes]
rs1546753	0.82[ASN][1000 genomes]
rs1719890	0.85[ASN][1000 genomes]
rs1719891	0.93[CEU][hapmap];0.84[ASN][1000 genomes]
rs1719894	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs17204878	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1732168	0.85[ASN][1000 genomes]
rs1732170	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs17810676	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2126583	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2319398	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs2319399	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs28536662	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3107669	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs334533	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334553	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334563	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334564	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4261913	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes]
rs4491945	0.84[ASN][1000 genomes]
rs4687890	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687892	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687893	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57695730	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58605236	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438552	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs6438553	1.00[CEU][hapmap];0.88[ASN][1000 genomes]
rs6781942	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782799	1.00[CEU][hapmap];0.86[ASN][1000 genomes]
rs6785049	0.81[ASN][1000 genomes]
rs6792572	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs6795653	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs6796420	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6800622	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs6805251	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs6808975	0.86[ASN][1000 genomes]
rs7611736	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7620750	0.84[CEU][hapmap]
rs7641045	0.85[ASN][1000 genomes]
rs7643875	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7644234	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9813864	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs9866394	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9873477	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs9878473	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9879295	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119712600-119745000	Weak transcription	Hela-S3	cervix
2	chr3:119713200-119744400	Weak transcription	Fetal Kidney	kidney
3	chr3:119731400-119752400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:119732200-119747200	Weak transcription	Gastric	stomach
5	chr3:119732200-119747600	Weak transcription	Right Ventricle	heart
6	chr3:119732600-119748400	Weak transcription	Brain Angular Gyrus	brain
7	chr3:119732600-119748600	Weak transcription	HSMM	muscle
8	chr3:119732600-119757800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:119732800-119746200	Weak transcription	Fetal Lung	lung
10	chr3:119732800-119749200	Weak transcription	Fetal Stomach	stomach
11	chr3:119733000-119747400	Weak transcription	Right Atrium	heart
12	chr3:119733200-119744200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:119734800-119750000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:119735000-119751600	Weak transcription	Primary B cells from cord blood	blood
15	chr3:119735800-119744400	Weak transcription	HMEC	breast
16	chr3:119736000-119746400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:119736600-119744000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:119737000-119749400	Weak transcription	Stomach Mucosa	stomach
19	chr3:119737000-119751800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:119737400-119744600	Weak transcription	HepG2	liver
21	chr3:119737400-119751800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:119737400-119754000	Weak transcription	Small Intestine	intestine
23	chr3:119737800-119757200	Weak transcription	A549	lung
24	chr3:119738400-119744800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:119738400-119747000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:119738600-119743600	Weak transcription	Fetal Intestine Large	intestine
27	chr3:119738600-119747000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:119738800-119746400	Weak transcription	Fetal Heart	heart
29	chr3:119739200-119744000	Weak transcription	Fetal Thymus	thymus
30	chr3:119739400-119756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:119739600-119749400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:119740000-119743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:119740000-119744000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:119740000-119744600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:119740000-119745000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:119740000-119747000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:119740000-119747200	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:119740000-119747400	Weak transcription	Lung	lung
39	chr3:119740000-119747400	Weak transcription	Ovary	ovary
40	chr3:119740000-119747600	Weak transcription	Pancreas	Pancrea
41	chr3:119740000-119758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:119740200-119744000	Weak transcription	NHEK	skin
43	chr3:119740600-119744200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:119740600-119748400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:119740800-119753400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:119741000-119743600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:119741000-119745400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:119741000-119758000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:119741200-119746200	Weak transcription	Brain Hippocampus Middle	brain
50	chr3:119741200-119748400	Weak transcription	HSMMtube	muscle

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