Variant report

Variant	rs1903830
Chromosome Location	chr19:45297878-45297879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:45296163..45298803-chr19:45301824..45303970,2	K562	blood:
2	chr19:45297303..45299593-chr19:45300939..45303324,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2968180	0.80[EUR][1000 genomes]
rs73572003	0.89[EUR][1000 genomes]
rs899087	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912116	chr19:45146103-45298069	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv833841	chr19:45208486-45308043	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45281400-45311400	Weak transcription	Right Atrium	heart
2	chr19:45284600-45309800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr19:45284800-45299600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:45284800-45303400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr19:45284800-45311400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr19:45285200-45299600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr19:45285200-45304000	Strong transcription	NHEK	skin
8	chr19:45288000-45303200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr19:45288000-45303200	Weak transcription	Spleen	Spleen
10	chr19:45288200-45299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr19:45289000-45299200	Strong transcription	Liver	Liver
12	chr19:45290600-45303400	Strong transcription	Fetal Intestine Large	intestine
13	chr19:45291400-45299200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr19:45292000-45299200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr19:45292000-45302400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:45292000-45302800	Strong transcription	HMEC	breast
17	chr19:45294200-45311600	Weak transcription	Small Intestine	intestine
18	chr19:45295400-45299000	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr19:45295400-45302600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr19:45295600-45298200	Strong transcription	Gastric	stomach
21	chr19:45295600-45298200	Strong transcription	Pancreas	Pancrea
22	chr19:45295600-45298400	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr19:45295600-45299200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr19:45295600-45299200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:45295800-45299200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr19:45296200-45299400	Weak transcription	GM12878-XiMat	blood
27	chr19:45296200-45310600	Weak transcription	Colonic Mucosa	Colon
28	chr19:45296400-45303200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr19:45296600-45299200	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr19:45296800-45299000	Weak transcription	Fetal Muscle Leg	muscle
31	chr19:45296800-45299200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr19:45296800-45311000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr19:45297000-45299000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr19:45297000-45299400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr19:45297000-45299400	Weak transcription	Stomach Mucosa	stomach
36	chr19:45297000-45299600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr19:45297000-45300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr19:45297000-45300200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:45297000-45300200	Weak transcription	Placenta	Placenta
40	chr19:45297000-45303200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr19:45297000-45307200	Weak transcription	Lung	lung
42	chr19:45297000-45311800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr19:45297400-45298600	Weak transcription	HepG2	liver
44	chr19:45297400-45299600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr19:45297400-45301200	Weak transcription	Esophagus	oesophagus
46	chr19:45297600-45298600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr19:45297600-45303600	Weak transcription	Fetal Stomach	stomach

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