Variant report

Variant	rs899087
Chromosome Location	chr19:45294557-45294558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:45287570..45291482-chr19:45293170..45295961,3	K562	blood:
2	chr19:45288594..45291095-chr19:45294412..45295961,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11673139	1.00[CHB][hapmap]
rs16979372	1.00[CHB][hapmap]
rs1903830	0.88[EUR][1000 genomes]
rs2967671	1.00[JPT][hapmap]
rs73572003	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912116	chr19:45146103-45298069	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv833841	chr19:45208486-45308043	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv2506	chr19:45253263-45297811	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45281400-45311400	Weak transcription	Right Atrium	heart
2	chr19:45281600-45295600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:45284600-45295600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:45284600-45309800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:45284800-45299600	Strong transcription	Fetal Intestine Small	intestine
6	chr19:45284800-45303400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:45284800-45311400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr19:45285200-45299600	Strong transcription	Duodenum Mucosa	Duodenum
9	chr19:45285200-45304000	Strong transcription	NHEK	skin
10	chr19:45288000-45296400	Weak transcription	Lung	lung
11	chr19:45288000-45303200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:45288000-45303200	Weak transcription	Spleen	Spleen
13	chr19:45288200-45295600	Weak transcription	Colonic Mucosa	Colon
14	chr19:45288200-45295600	Weak transcription	Pancreas	Pancrea
15	chr19:45288200-45299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr19:45289000-45299200	Strong transcription	Liver	Liver
17	chr19:45290200-45295400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr19:45290200-45295600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr19:45290600-45303400	Strong transcription	Fetal Intestine Large	intestine
20	chr19:45291400-45299200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr19:45292000-45294800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr19:45292000-45295800	Strong transcription	Fetal Stomach	stomach
23	chr19:45292000-45299200	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr19:45292000-45302400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:45292000-45302800	Strong transcription	HMEC	breast
26	chr19:45292600-45295600	Weak transcription	Stomach Mucosa	stomach
27	chr19:45293400-45295400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr19:45293600-45295600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr19:45293600-45295600	Weak transcription	Esophagus	oesophagus
30	chr19:45293600-45295600	Weak transcription	Gastric	stomach
31	chr19:45293600-45295600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr19:45293600-45296200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr19:45293600-45296400	Weak transcription	HepG2	liver
34	chr19:45294000-45295400	Weak transcription	Fetal Muscle Leg	muscle
35	chr19:45294000-45295400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr19:45294000-45295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr19:45294000-45295600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr19:45294000-45297200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr19:45294200-45311600	Weak transcription	Small Intestine	intestine
40	chr19:45294400-45296600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr19:45294400-45297400	Enhancers	Fetal Muscle Trunk	muscle

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