Variant report

Variant	rs1904349
Chromosome Location	chr3:138063327-138063328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138061492..138063672-chr3:138066215..138068384,2	K562	blood:

Variant related genes	Relation type
ENSG00000158186	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1002766	0.83[ASN][1000 genomes]
rs12107581	0.80[ASN][1000 genomes]
rs12490350	0.80[ASN][1000 genomes]
rs1564407	0.81[ASN][1000 genomes]
rs1564408	0.83[ASN][1000 genomes]
rs2054468	0.80[ASN][1000 genomes]
rs3755751	0.84[ASN][1000 genomes]
rs3773752	0.81[ASN][1000 genomes]
rs3773758	0.80[ASN][1000 genomes]
rs3773759	0.81[ASN][1000 genomes]
rs3816730	0.81[ASN][1000 genomes]
rs4678260	0.80[ASN][1000 genomes]
rs4678261	0.80[ASN][1000 genomes]
rs4678412	0.81[ASN][1000 genomes]
rs4678415	0.81[ASN][1000 genomes]
rs4678417	0.80[ASN][1000 genomes]
rs6439807	0.81[ASN][1000 genomes]
rs67559768	0.83[ASN][1000 genomes]
rs6769236	0.84[ASN][1000 genomes]
rs6769261	0.84[ASN][1000 genomes]
rs6782449	0.84[ASN][1000 genomes]
rs6784989	0.84[ASN][1000 genomes]
rs730158	0.81[ASN][1000 genomes]
rs731632	0.81[ASN][1000 genomes]
rs751357	0.81[ASN][1000 genomes]
rs7615658	0.84[ASN][1000 genomes]
rs7626388	0.81[ASN][1000 genomes]
rs7626424	0.81[ASN][1000 genomes]
rs7637666	0.84[ASN][1000 genomes]
rs7639809	0.81[ASN][1000 genomes]
rs7639850	0.81[ASN][1000 genomes]
rs9289559	0.80[ASN][1000 genomes]
rs9845672	0.84[ASN][1000 genomes]
rs9846198	0.84[ASN][1000 genomes]
rs9846223	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv528349	chr3:138025396-138132393	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1796956	chr3:138051423-138122781	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1848610	chr3:138051423-138133412	Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138057400-138066400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:138058200-138066200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:138061200-138066200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:138062400-138063800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:138062600-138064800	Enhancers	HepG2	liver
6	chr3:138062800-138064200	Enhancers	Liver	Liver
7	chr3:138062800-138066200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:138062800-138066600	Weak transcription	Ovary	ovary
9	chr3:138063000-138064000	Enhancers	Pancreas	Pancrea
10	chr3:138063200-138066200	Weak transcription	Adipose Nuclei	Adipose

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