Variant report

Variant	rs1905412
Chromosome Location	chr12:33496183-33496184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10732554	1.00[ASN][1000 genomes]
rs10743816	0.90[EUR][1000 genomes]
rs10772076	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10844554	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10844582	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10844611	0.87[ASN][1000 genomes]
rs10844612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10844613	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs10844614	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11052601	0.87[EUR][1000 genomes]
rs11052705	0.91[ASN][1000 genomes]
rs11052736	0.80[ASN][1000 genomes]
rs12301124	0.89[CHB][hapmap];1.00[ASN][1000 genomes]
rs12819439	0.80[ASN][1000 genomes]
rs1351682	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1351683	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1447873	0.87[ASN][1000 genomes]
rs1482987	0.87[ASN][1000 genomes]
rs1482993	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1580396	0.87[ASN][1000 genomes]
rs1601006	0.87[ASN][1000 genomes]
rs1601007	0.87[ASN][1000 genomes]
rs1601008	0.87[ASN][1000 genomes]
rs1601140	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1601144	0.87[EUR][1000 genomes]
rs1905240	0.80[ASN][1000 genomes]
rs1905403	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1905408	1.00[ASN][1000 genomes]
rs1905427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1994135	0.80[ASN][1000 genomes]
rs2389194	1.00[ASN][1000 genomes]
rs2389218	0.85[ASN][1000 genomes]
rs2892701	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4244865	1.00[ASN][1000 genomes]
rs4244866	1.00[ASN][1000 genomes]
rs4551851	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4931717	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4931719	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6488162	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7294492	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7311794	0.82[ASN][1000 genomes]
rs7315695	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7971226	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7980799	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9888363	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1035988	chr12:33399053-33699363	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv670	chr12:33458451-33503100	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv558247	chr12:33481504-34245756	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33495800-33496600	Enhancers	Fetal Intestine Large	intestine

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