Variant report

Variant	rs1906162
Chromosome Location	chr15:40029008-40029009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1166721	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12324408	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12439384	0.87[EUR][1000 genomes]
rs12591862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595664	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1602543	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16969786	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1906165	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6492913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs67248221	0.86[EUR][1000 genomes]
rs7165244	1.00[CEU][hapmap]
rs72727034	1.00[AFR][1000 genomes]
rs72727074	1.00[EUR][1000 genomes]
rs72727076	0.90[EUR][1000 genomes]
rs72729404	1.00[AFR][1000 genomes]
rs72729408	1.00[AFR][1000 genomes]
rs72729424	1.00[AFR][1000 genomes]
rs73397128	0.80[EUR][1000 genomes]
rs8036018	0.82[EUR][1000 genomes]
rs8182052	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40027000-40029400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr15:40027600-40029600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:40028200-40029200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr15:40028400-40029200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:40028400-40029200	Enhancers	Fetal Muscle Leg	muscle
7	chr15:40028400-40029400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:40028400-40029400	Enhancers	Adipose Nuclei	Adipose
9	chr15:40028400-40029600	Enhancers	Placenta	Placenta
10	chr15:40028400-40029600	Enhancers	Fetal Stomach	stomach
11	chr15:40028400-40029600	Enhancers	Left Ventricle	heart
12	chr15:40028600-40029200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:40028600-40029200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:40028600-40029600	Enhancers	Brain Germinal Matrix	brain
15	chr15:40028600-40029600	Enhancers	NHDF-Ad	bronchial
16	chr15:40028800-40029200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:40028800-40029200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:40028800-40029200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:40028800-40029200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr15:40028800-40029200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:40028800-40029400	Enhancers	Fetal Muscle Trunk	muscle
22	chr15:40028800-40029600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr15:40029000-40029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:40029000-40029200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:40029000-40029400	Enhancers	Fetal Brain Male	brain
26	chr15:40029000-40029600	Enhancers	K562	blood
27	chr15:40029000-40037200	Weak transcription	Right Atrium	heart

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