Variant report

Variant	rs72727076
Chromosome Location	chr15:40037876-40037877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1166721	0.88[ASN][1000 genomes]
rs12324408	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439384	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12591862	0.90[EUR][1000 genomes]
rs12595664	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1602543	0.87[ASN][1000 genomes]
rs16969786	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1906162	0.90[EUR][1000 genomes]
rs1906163	0.86[ASN][1000 genomes]
rs1906164	0.86[ASN][1000 genomes]
rs1906165	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2638012	0.87[ASN][1000 genomes]
rs60676466	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6492913	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6492916	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67248221	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67895637	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72727074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729404	0.83[EUR][1000 genomes]
rs72729433	1.00[AFR][1000 genomes]
rs73397128	0.90[EUR][1000 genomes]
rs8028323	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036018	0.96[ASN][1000 genomes]
rs8182052	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40029200-40040200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:40029600-40038600	Weak transcription	NHDF-Ad	bronchial
4	chr15:40033600-40040200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:40034400-40038400	Weak transcription	Osteobl	bone
6	chr15:40034600-40038400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:40034800-40038600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:40035000-40040400	Weak transcription	Adipose Nuclei	Adipose
9	chr15:40035200-40038400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:40035600-40050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:40036200-40039000	Weak transcription	A549	lung
12	chr15:40036800-40038400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:40037000-40039600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:40037600-40038000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:40037600-40038200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:40037800-40038000	Enhancers	HMEC	breast
17	chr15:40037800-40038000	Enhancers	NHEK	skin
18	chr15:40037800-40038800	Enhancers	Placenta	Placenta
19	chr15:40037800-40041400	Enhancers	Hela-S3	cervix

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