Variant report

Variant	rs1906164
Chromosome Location	chr15:40032749-40032750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1021410	0.80[CEU][hapmap]
rs1166716	0.89[CEU][hapmap]
rs1166717	0.87[ASN][1000 genomes]
rs1166721	0.84[JPT][hapmap]
rs1166723	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs12324408	0.88[CHB][hapmap];0.81[CHD][hapmap]
rs12595664	0.85[CHB][hapmap]
rs16969786	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs1906163	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906165	0.88[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2412426	0.80[MKK][hapmap];0.89[YRI][hapmap]
rs2576932	0.89[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap]
rs2576933	0.89[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap]
rs2631714	0.89[CEU][hapmap]
rs2638009	0.88[CEU][hapmap]
rs4924389	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs60676466	0.87[ASN][1000 genomes]
rs6492913	0.88[CHB][hapmap];0.83[CHD][hapmap];0.89[ASN][1000 genomes]
rs6492914	0.88[CEU][hapmap];0.85[GIH][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs6492916	0.86[ASN][1000 genomes]
rs67895637	0.81[ASN][1000 genomes]
rs7179417	0.88[CEU][hapmap]
rs7179742	0.81[CEU][hapmap]
rs7180846	0.81[CEU][hapmap]
rs72727074	0.89[ASN][1000 genomes]
rs72727076	0.86[ASN][1000 genomes]
rs8028323	0.86[ASN][1000 genomes]
rs8031241	0.89[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs8036018	0.89[ASN][1000 genomes]
rs8182052	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40029000-40037200	Weak transcription	Right Atrium	heart
3	chr15:40029200-40033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:40029200-40033400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:40029200-40040200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:40029400-40033400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:40029400-40033400	Weak transcription	Adipose Nuclei	Adipose
8	chr15:40029400-40033400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:40029600-40033000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:40029600-40038600	Weak transcription	NHDF-Ad	bronchial
11	chr15:40032600-40035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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