Variant report

Variant	rs1907382
Chromosome Location	chr10:28004360-28004361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27997284..27999257-chr10:28002507..28005191,2	K562	blood:
2	chr10:28000067..28003479-chr10:28003603..28008037,4	K562	blood:
3	chr10:28000828..28003406-chr10:28003603..28005952,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1907377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994656	1.00[CEU][hapmap]
rs2130808	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2253382	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2368251	1.00[MEX][hapmap]
rs2451922	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2637292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637295	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637296	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637298	0.83[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2637306	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2637318	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2637319	1.00[EUR][1000 genomes]
rs2815480	0.83[AFR][1000 genomes]
rs2815481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28002600-28004800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:28002800-28004400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:28002800-28004600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:28003000-28004800	Enhancers	Left Ventricle	heart
5	chr10:28003400-28005200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:28003600-28004600	Enhancers	HSMMtube	muscle
7	chr10:28003600-28004800	Enhancers	Aorta	Aorta
8	chr10:28003600-28005400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:28003800-28004400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:28003800-28004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:28003800-28004800	Enhancers	Fetal Muscle Leg	muscle
12	chr10:28003800-28004800	Enhancers	Ovary	ovary
13	chr10:28003800-28004800	Enhancers	Psoas Muscle	Psoas
14	chr10:28003800-28004800	Enhancers	NHDF-Ad	bronchial
15	chr10:28004000-28004600	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr10:28004000-28004800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:28004000-28006800	Enhancers	Osteobl	bone
18	chr10:28004000-28007000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:28004200-28004600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:28004200-28004600	Enhancers	Fetal Heart	heart
21	chr10:28004200-28005000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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