Variant report

Variant	rs2815480
Chromosome Location	chr10:28018516-28018517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1907382	0.83[AFR][1000 genomes]
rs2637292	0.83[AFR][1000 genomes]
rs2637294	0.90[AFR][1000 genomes]
rs2637295	0.90[AFR][1000 genomes]
rs2637296	0.90[AFR][1000 genomes]
rs2637298	0.81[AFR][1000 genomes]
rs2637306	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28012800-28020000	Weak transcription	Fetal Stomach	stomach
2	chr10:28013400-28020400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:28016600-28024000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:28017200-28020400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:28017400-28020000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:28017600-28019800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:28017600-28020000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:28017600-28020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:28017600-28020400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:28017600-28020400	Weak transcription	Osteobl	bone
11	chr10:28017800-28018800	Enhancers	Ovary	ovary
12	chr10:28018000-28020200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:28018000-28030600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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