Variant report
| Variant | rs1908952 |
|---|---|
| Chromosome Location | chr21:28382503-28382504 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11909037 | 1.00[CHB][hapmap] |
| rs12152042 | 1.00[ASN][1000 genomes] |
| rs12152045 | 1.00[ASN][1000 genomes] |
| rs12483612 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1497283 | 1.00[ASN][1000 genomes] |
| rs1497285 | 1.00[ASN][1000 genomes] |
| rs1497286 | 1.00[ASN][1000 genomes] |
| rs1497287 | 1.00[ASN][1000 genomes] |
| rs1497288 | 0.96[EUR][1000 genomes] |
| rs162490 | 1.00[JPT][hapmap] |
| rs162492 | 1.00[JPT][hapmap] |
| rs162498 | 1.00[JPT][hapmap] |
| rs162501 | 1.00[JPT][hapmap] |
| rs162504 | 1.00[JPT][hapmap] |
| rs162510 | 1.00[JPT][hapmap] |
| rs17663092 | 1.00[CHB][hapmap] |
| rs1846024 | 1.00[ASN][1000 genomes] |
| rs229053 | 1.00[JPT][hapmap] |
| rs229076 | 1.00[JPT][hapmap] |
| rs229078 | 1.00[JPT][hapmap] |
| rs229087 | 1.00[JPT][hapmap] |
| rs229088 | 1.00[JPT][hapmap] |
| rs229093 | 1.00[JPT][hapmap] |
| rs229095 | 1.00[JPT][hapmap] |
| rs229097 | 1.00[JPT][hapmap] |
| rs4817147 | 0.85[EUR][1000 genomes] |
| rs55771980 | 1.00[ASN][1000 genomes] |
| rs56734947 | 1.00[ASN][1000 genomes] |
| rs58512366 | 1.00[ASN][1000 genomes] |
| rs73358100 | 1.00[ASN][1000 genomes] |
| rs73360007 | 1.00[ASN][1000 genomes] |
| rs7348989 | 1.00[ASN][1000 genomes] |
| rs73899348 | 0.92[EUR][1000 genomes] |
| rs8130700 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8992 | 1.00[JPT][hapmap] |
| rs9305294 | 1.00[CHB][hapmap] |
| rs9647124 | 0.85[EUR][1000 genomes] |
| rs9976701 | 1.00[CHB][hapmap] |
| rs9977087 | 1.00[CHB][hapmap] |
| rs9978597 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067475 | chr21:28238746-29046707 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv2758532 | chr21:28380230-28540443 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | esv2758817 | chr21:28380230-28540443 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv1066128 | chr21:28382038-28403842 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 5 | nsv1066134 | chr21:28382038-28406482 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 6 | nsv1055852 | chr21:28382038-28407515 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:28351800-28416600 | Weak transcription | Ovary | ovary |
| 2 | chr21:28366600-28394800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
