Variant report

Variant	rs1910466
Chromosome Location	chr3:147086268-147086269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1503732	0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs1503733	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503737	0.81[ASN][1000 genomes]
rs2318780	0.85[AMR][1000 genomes]
rs2654819	0.81[YRI][hapmap]
rs2654820	0.81[YRI][hapmap]
rs28541581	0.81[ASN][1000 genomes]
rs4681356	0.93[YRI][hapmap]
rs6797793	0.86[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs7622107	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs884370	0.81[YRI][hapmap]
rs9289745	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1910466	MBNL1	cis	cerebellum	SCAN
rs1910466	ZIC4	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147085200-147089200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr3:147085400-147086600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:147085400-147087800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr3:147085400-147088400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr3:147085400-147091600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:147085600-147087200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr3:147085800-147086600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:147086000-147087000	Enhancers	HepG2	liver
9	chr3:147086000-147091400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr3:147086200-147086600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:147086200-147086600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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