Variant report

Variant	rs28541581
Chromosome Location	chr3:147086536-147086537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1503732	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503733	0.85[ASN][1000 genomes]
rs1503737	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910466	0.81[ASN][1000 genomes]
rs6797793	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147085200-147089200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr3:147085400-147086600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:147085400-147087800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr3:147085400-147088400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr3:147085400-147091600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:147085600-147087200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr3:147085800-147086600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:147086000-147087000	Enhancers	HepG2	liver
9	chr3:147086000-147091400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr3:147086200-147086600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:147086200-147086600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
12	chr3:147086400-147086600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr3:147086400-147087000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr3:147086400-147087000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr3:147086400-147088200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:147086400-147088400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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