Variant report
| Variant | rs1910690 |
|---|---|
| Chromosome Location | chr1:57712000-57712001 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs1149628 | 0.88[ASN][1000 genomes] |
| rs1424473 | 0.90[ASN][1000 genomes] |
| rs197625 | 0.99[ASN][1000 genomes] |
| rs197626 | 0.95[ASN][1000 genomes] |
| rs197638 | 0.97[ASN][1000 genomes] |
| rs197644 | 0.97[ASN][1000 genomes] |
| rs197645 | 0.96[ASN][1000 genomes] |
| rs197649 | 0.97[ASN][1000 genomes] |
| rs2251472 | 0.97[ASN][1000 genomes] |
| rs2656093 | 0.86[ASN][1000 genomes] |
| rs2764665 | 0.90[ASN][1000 genomes] |
| rs486809 | 0.88[ASN][1000 genomes] |
| rs488405 | 0.97[ASN][1000 genomes] |
| rs492781 | 0.88[ASN][1000 genomes] |
| rs492905 | 0.97[ASN][1000 genomes] |
| rs493846 | 0.97[ASN][1000 genomes] |
| rs515802 | 0.97[ASN][1000 genomes] |
| rs529527 | 0.99[ASN][1000 genomes] |
| rs537441 | 0.93[ASN][1000 genomes] |
| rs539229 | 0.97[ASN][1000 genomes] |
| rs542873 | 0.99[ASN][1000 genomes] |
| rs542949 | 0.99[ASN][1000 genomes] |
| rs548897 | 0.80[EUR][1000 genomes] |
| rs572092 | 0.97[ASN][1000 genomes] |
| rs584147 | 0.97[ASN][1000 genomes] |
| rs587046 | 0.86[ASN][1000 genomes] |
| rs593154 | 0.97[ASN][1000 genomes] |
| rs595568 | 0.85[ASN][1000 genomes] |
| rs597941 | 0.84[ASN][1000 genomes] |
| rs611276 | 0.99[ASN][1000 genomes] |
| rs614488 | 0.99[ASN][1000 genomes] |
| rs627489 | 0.99[ASN][1000 genomes] |
| rs627550 | 0.89[ASN][1000 genomes] |
| rs627936 | 0.99[ASN][1000 genomes] |
| rs655277 | 0.97[ASN][1000 genomes] |
| rs657612 | 0.86[ASN][1000 genomes] |
| rs659069 | 0.99[ASN][1000 genomes] |
| rs663975 | 0.86[ASN][1000 genomes] |
| rs66894620 | 0.97[ASN][1000 genomes] |
| rs669931 | 0.97[ASN][1000 genomes] |
| rs675075 | 0.86[ASN][1000 genomes] |
| rs686702 | 0.97[ASN][1000 genomes] |
| rs693942 | 0.99[ASN][1000 genomes] |
| rs706385 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461628 | chr1:57463326-57816489 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv546305 | chr1:57463326-57816489 | Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57705200-57712000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr1:57711800-57712600 | ZNF genes & repeats | Fetal Intestine Large | intestine |
| 3 | chr1:57711800-57712800 | ZNF genes & repeats | Fetal Intestine Small | intestine |
| 4 | chr1:57712000-57712400 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
