Variant report

Variant	rs1149628
Chromosome Location	chr1:57752827-57752828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11207002	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11587719	0.95[CHB][hapmap]
rs12135189	0.95[CHB][hapmap]
rs1424473	0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs1811699	0.95[CHB][hapmap]
rs1811700	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1910690	0.88[ASN][1000 genomes]
rs197625	0.86[ASN][1000 genomes]
rs197626	0.95[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs197627	0.90[CHB][hapmap]
rs197638	0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs197643	0.95[CHB][hapmap]
rs197644	0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs197645	0.86[ASN][1000 genomes]
rs197647	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs197649	0.88[ASN][1000 genomes]
rs197650	0.95[CHB][hapmap]
rs2251472	0.95[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2432690	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes]
rs2656093	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs2656094	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs2656095	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2764664	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2764665	0.85[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs486809	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487566	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs488405	0.88[ASN][1000 genomes]
rs492781	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs492905	0.88[ASN][1000 genomes]
rs493846	0.88[ASN][1000 genomes]
rs499397	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs511707	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs515802	0.88[ASN][1000 genomes]
rs529527	0.86[ASN][1000 genomes]
rs537441	0.81[ASN][1000 genomes]
rs539229	0.85[ASN][1000 genomes]
rs542873	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs542949	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs545582	0.95[CHB][hapmap]
rs545671	0.85[EUR][1000 genomes]
rs561531	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs572092	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs576038	0.85[EUR][1000 genomes]
rs581886	0.95[CHB][hapmap]
rs584147	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs587046	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs593154	0.88[ASN][1000 genomes]
rs595513	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs595568	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs597941	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs611276	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs611606	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs614488	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs620214	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs622423	0.95[CHB][hapmap]
rs627489	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs627550	0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs627936	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs632935	0.95[CHB][hapmap]
rs634391	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs637379	0.95[CHB][hapmap]
rs642526	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes]
rs643382	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs648607	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs655277	0.88[ASN][1000 genomes]
rs657612	0.98[ASN][1000 genomes]
rs659069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs663975	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs66894620	0.84[ASN][1000 genomes]
rs669931	0.85[ASN][1000 genomes]
rs674966	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs675075	0.98[ASN][1000 genomes]
rs686702	0.88[ASN][1000 genomes]
rs693942	0.86[ASN][1000 genomes]
rs706385	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529737	0.95[CHB][hapmap]
rs833626	0.95[CHB][hapmap]
rs924850	0.95[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57742200-57755400	Weak transcription	Fetal Brain Male	brain
2	chr1:57747600-57769400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:57748400-57755200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:57751600-57765600	Weak transcription	Fetal Intestine Small	intestine
5	chr1:57751600-57770600	Weak transcription	Fetal Intestine Large	intestine

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