Variant report

Variant	rs197627
Chromosome Location	chr1:57708548-57708549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57699019..57701409-chr1:57708056..57710279,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10889033	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207002	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1149628	0.90[CHB][hapmap]
rs11587719	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12088611	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12135189	0.95[CHB][hapmap]
rs12143340	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs127600	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1811699	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1811700	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs197625	0.83[EUR][1000 genomes]
rs197626	0.81[CEU][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs197635	0.83[EUR][1000 genomes]
rs197636	0.96[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs197637	0.96[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs197638	0.81[CEU][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.83[EUR][1000 genomes]
rs197639	0.84[EUR][1000 genomes]
rs197640	0.84[EUR][1000 genomes]
rs197641	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs197642	0.96[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs197643	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs197644	0.81[CEU][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs197645	0.84[EUR][1000 genomes]
rs197647	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs197649	0.84[EUR][1000 genomes]
rs197650	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251472	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs2432690	0.95[CHB][hapmap]
rs2656095	0.95[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs2764664	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2764666	0.83[ASN][1000 genomes]
rs471548	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs485723	0.81[ASN][1000 genomes]
rs488405	0.84[EUR][1000 genomes]
rs492905	0.84[EUR][1000 genomes]
rs492986	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs493846	0.84[EUR][1000 genomes]
rs511707	0.95[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs515802	0.84[EUR][1000 genomes]
rs524171	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs529527	0.84[EUR][1000 genomes]
rs539229	0.84[EUR][1000 genomes]
rs542873	0.81[CEU][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs542949	0.87[GIH][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs545582	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs552727	0.84[EUR][1000 genomes]
rs561531	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs572092	0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs581886	0.95[CHB][hapmap];0.84[CHD][hapmap]
rs583845	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs593154	0.84[EUR][1000 genomes]
rs595513	0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs611276	0.81[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs611606	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs614488	0.81[CEU][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes]
rs622423	0.95[CHB][hapmap];0.83[CHD][hapmap]
rs627489	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs627936	0.84[EUR][1000 genomes]
rs632935	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs634391	0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs637379	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs642526	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs643382	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs648607	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs655277	0.84[EUR][1000 genomes]
rs659069	0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs669931	0.84[EUR][1000 genomes]
rs674966	0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs693942	0.84[EUR][1000 genomes]
rs7529737	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs833626	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs924850	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57702200-57711800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57705200-57712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57708200-57711800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links