Variant report

Variant	rs1913299
Chromosome Location	chr4:76632730-76632731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10025315	0.80[EUR][1000 genomes]
rs11097070	0.82[AMR][1000 genomes]
rs11736474	0.80[AMR][1000 genomes]
rs13116639	0.80[AMR][1000 genomes]
rs13118426	0.82[AMR][1000 genomes]
rs13133699	0.80[AMR][1000 genomes]
rs13137468	0.82[AMR][1000 genomes]
rs13138717	0.82[AMR][1000 genomes]
rs1546539	0.80[AMR][1000 genomes]
rs1548175	0.80[AMR][1000 genomes]
rs1553986	0.82[AMR][1000 genomes]
rs1967495	0.82[AMR][1000 genomes]
rs1967496	0.82[AMR][1000 genomes]
rs3796473	0.80[AMR][1000 genomes]
rs3796485	0.82[AMR][1000 genomes]
rs4349625	0.82[AMR][1000 genomes]
rs4859403	0.82[AMR][1000 genomes]
rs4859542	0.80[AMR][1000 genomes]
rs4859543	0.80[AMR][1000 genomes]
rs4859545	0.82[AMR][1000 genomes]
rs4859546	0.82[AMR][1000 genomes]
rs4859547	0.82[AMR][1000 genomes]
rs4859548	0.82[AMR][1000 genomes]
rs6531866	0.82[AMR][1000 genomes]
rs6531868	0.82[AMR][1000 genomes]
rs6826858	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6827809	0.80[EUR][1000 genomes]
rs6835702	0.80[AMR][1000 genomes]
rs6858741	0.80[AMR][1000 genomes]
rs7659408	0.82[AMR][1000 genomes]
rs7672378	0.82[AMR][1000 genomes]
rs7674328	0.80[AMR][1000 genomes]
rs7685459	0.80[AMR][1000 genomes]
rs7691765	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1003516	chr4:76597112-76729576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv537143	chr4:76597112-76729576	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76599200-76640000	Weak transcription	Aorta	Aorta
2	chr4:76599600-76639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:76599600-76639800	Weak transcription	Brain Angular Gyrus	brain
4	chr4:76599600-76639800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:76599600-76647600	Weak transcription	Fetal Brain Female	brain
6	chr4:76600400-76640000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:76605800-76633200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:76607400-76640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:76613800-76639000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:76613800-76639600	Weak transcription	Ovary	ovary
11	chr4:76615600-76639800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:76615600-76639800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:76615800-76639000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:76616000-76640000	Weak transcription	Lung	lung
15	chr4:76618200-76635000	Weak transcription	Adipose Nuclei	Adipose
16	chr4:76618400-76639000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:76619400-76633400	Weak transcription	Fetal Kidney	kidney
18	chr4:76620000-76640000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:76620400-76639600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:76620600-76640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:76621000-76640600	Weak transcription	Right Ventricle	heart
22	chr4:76621800-76642400	Weak transcription	Left Ventricle	heart
23	chr4:76622000-76639400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:76622200-76639800	Weak transcription	HSMMtube	muscle
25	chr4:76623800-76647600	Weak transcription	Fetal Heart	heart
26	chr4:76624200-76640600	Weak transcription	Fetal Thymus	thymus
27	chr4:76624400-76633400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:76624400-76647200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:76624400-76647800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:76624600-76634600	Weak transcription	Primary B cells from cord blood	blood
31	chr4:76624600-76646800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:76624800-76633200	Weak transcription	Primary T cells from cord blood	blood
33	chr4:76624800-76634600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:76624800-76634600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:76624800-76634600	Weak transcription	GM12878-XiMat	blood
36	chr4:76624800-76634800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:76624800-76647600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr4:76628000-76639800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:76628400-76639600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:76628600-76633200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:76628600-76633400	Weak transcription	Psoas Muscle	Psoas
42	chr4:76628600-76633400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:76628600-76640000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:76628800-76635600	Weak transcription	A549	lung
45	chr4:76628800-76642200	Weak transcription	Fetal Stomach	stomach
46	chr4:76629000-76633200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr4:76629000-76633200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:76629000-76633200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:76629000-76633200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:76629000-76635000	Weak transcription	Liver	Liver

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