Variant report

Variant	rs13133699
Chromosome Location	chr4:76553030-76553031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10014281	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10025315	0.90[EUR][1000 genomes]
rs10028884	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10029110	0.82[AMR][1000 genomes]
rs11097069	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11097070	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11729258	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11736474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11737705	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13116639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13118426	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13137468	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13138717	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13140908	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1464070	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1464071	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1546539	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1548175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1553984	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553986	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1828629	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1913299	0.80[AMR][1000 genomes]
rs1967495	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1967496	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs226416	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2280095	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs324685	0.82[AMR][1000 genomes]
rs324689	0.82[AMR][1000 genomes]
rs324707	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324708	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324711	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324715	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324716	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324717	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324718	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324721	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs324737	0.82[AMR][1000 genomes]
rs3796473	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3796485	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3796488	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3853183	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853184	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3942252	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4337757	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4349625	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs436611	0.80[EUR][1000 genomes]
rs443952	0.82[AMR][1000 genomes]
rs4859403	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859537	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4859542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859543	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4859544	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859545	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859546	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859547	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859548	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859550	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5020591	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6419115	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6531778	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6531841	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6531866	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6531867	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6531868	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6531889	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6531902	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6531903	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6826858	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6827809	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6828365	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6829402	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6832912	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6835819	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6842216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6855321	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6858530	0.88[AFR][1000 genomes]
rs6858741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7356270	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7356310	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7657871	0.84[EUR][1000 genomes]
rs7659408	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7662940	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7672378	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7674063	0.84[AMR][1000 genomes]
rs7674328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7677150	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7685459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691385	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7691765	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7696241	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9942164	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9998246	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879495	chr4:76493256-76585823	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv879496	chr4:76493256-76620803	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv879497	chr4:76519096-76620803	Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv1793652	chr4:76521217-76581775	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76526200-76554400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:76548200-76555200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:76548600-76555200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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