Variant report

Variant	rs4337757
Chromosome Location	chr4:76497318-76497319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76490931..76493112-chr4:76495867..76498198,2	MCF-7	breast:
2	chr4:76487529..76489758-chr4:76496405..76499306,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11097070	0.82[EUR][1000 genomes]
rs11736474	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11737705	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13116639	0.82[EUR][1000 genomes]
rs13118426	0.82[EUR][1000 genomes]
rs13133699	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13137468	0.82[EUR][1000 genomes]
rs13138717	0.82[EUR][1000 genomes]
rs13140908	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1464070	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1464071	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1546539	0.82[EUR][1000 genomes]
rs1548175	0.82[EUR][1000 genomes]
rs1553984	0.86[EUR][1000 genomes]
rs1553986	0.82[EUR][1000 genomes]
rs1967495	0.82[EUR][1000 genomes]
rs1967496	0.82[EUR][1000 genomes]
rs3796473	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3796485	0.82[EUR][1000 genomes]
rs3796488	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3853183	0.86[EUR][1000 genomes]
rs4349625	0.82[EUR][1000 genomes]
rs4859403	0.82[EUR][1000 genomes]
rs4859537	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859542	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4859543	0.82[EUR][1000 genomes]
rs4859546	0.82[EUR][1000 genomes]
rs4859547	0.82[EUR][1000 genomes]
rs4859548	0.82[EUR][1000 genomes]
rs6531778	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6531841	0.82[EUR][1000 genomes]
rs6531866	0.82[EUR][1000 genomes]
rs6531867	0.81[EUR][1000 genomes]
rs6531868	0.81[EUR][1000 genomes]
rs6827809	0.80[EUR][1000 genomes]
rs6829402	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6832912	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6835702	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7659408	0.82[EUR][1000 genomes]
rs7672378	0.82[EUR][1000 genomes]
rs7674328	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7685459	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7691765	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv879495	chr4:76493256-76585823	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv879496	chr4:76493256-76620803	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv292568	chr4:76495414-76499599	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76487400-76498400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:76491800-76498600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:76493400-76498600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:76493400-76498800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:76495000-76498600	Weak transcription	Right Atrium	heart

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