Variant report

Variant	rs13140908
Chromosome Location	chr4:76516716-76516717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76516417..76517951-chr4:76520550..76523140,2	K562	blood:

Variant related genes	Relation type
ENSG00000138769	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097070	0.82[EUR][1000 genomes]
rs11736474	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11737705	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116639	0.82[EUR][1000 genomes]
rs13118426	0.82[EUR][1000 genomes]
rs13133699	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13137468	0.82[EUR][1000 genomes]
rs13138717	0.82[EUR][1000 genomes]
rs1464070	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464071	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546539	0.82[EUR][1000 genomes]
rs1548175	0.82[EUR][1000 genomes]
rs1553984	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1553986	0.82[EUR][1000 genomes]
rs1967495	0.82[EUR][1000 genomes]
rs1967496	0.82[EUR][1000 genomes]
rs3796473	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3796485	0.82[EUR][1000 genomes]
rs3796488	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853183	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4337757	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4349625	0.82[EUR][1000 genomes]
rs4859403	0.82[EUR][1000 genomes]
rs4859537	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859542	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4859543	0.82[EUR][1000 genomes]
rs4859546	0.82[EUR][1000 genomes]
rs4859547	0.82[EUR][1000 genomes]
rs4859548	0.82[EUR][1000 genomes]
rs6531778	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531841	0.82[EUR][1000 genomes]
rs6531866	0.82[EUR][1000 genomes]
rs6531867	0.81[EUR][1000 genomes]
rs6531868	0.81[EUR][1000 genomes]
rs6827809	0.80[EUR][1000 genomes]
rs6829402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6832912	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835702	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6858741	0.81[AFR][1000 genomes]
rs7659408	0.82[EUR][1000 genomes]
rs7672378	0.82[EUR][1000 genomes]
rs7674328	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7685459	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7691765	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879495	chr4:76493256-76585823	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv879496	chr4:76493256-76620803	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76504400-76535200	Weak transcription	Aorta	Aorta
2	chr4:76504800-76526800	Weak transcription	Fetal Brain Female	brain
3	chr4:76508000-76524800	Weak transcription	Brain Angular Gyrus	brain
4	chr4:76509600-76532200	Weak transcription	Lung	lung
5	chr4:76509800-76530600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:76510000-76524800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:76512600-76527000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:76514800-76527200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:76515600-76526400	Weak transcription	Pancreas	Pancrea
10	chr4:76516600-76517200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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