Variant report

Variant	rs7356270
Chromosome Location	chr4:76643274-76643275
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76642183..76644584-chr4:76655445..76657261,2	MCF-7	breast:
2	chr4:76640891..76645674-chr4:76646043..76650611,7	K562	blood:
3	chr4:76634356..76637293-chr4:76642059..76644795,2	MCF-7	breast:
4	chr4:76633806..76638911-chr4:76639388..76643502,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USO1-3	chr4:76643050-76643486	NONHSAT096937

Variant related genes	Relation type
ENSG00000138757	Chromatin interaction
ENSG00000138768	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10009902	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10010519	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10014281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025315	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10028884	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10029110	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097069	0.81[EUR][1000 genomes]
rs11097070	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11729258	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736474	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13116639	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13118426	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13133699	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13137468	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13138717	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1546539	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1548175	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1553984	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1553986	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1967495	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1967496	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs226416	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2280095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869174	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs324682	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs324683	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs324685	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs324689	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs324692	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs324695	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs324707	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324708	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324711	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324715	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324716	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324717	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324718	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324721	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324724	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs324725	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs324737	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3796473	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3796485	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3853183	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3853184	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3942252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349625	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs436611	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs443952	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859403	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4859542	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4859543	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4859544	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4859545	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4859546	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4859547	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4859548	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4859550	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5020591	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6419115	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6531841	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6531866	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6531867	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6531868	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6531889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531902	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6531903	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6826858	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6827809	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6835702	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6835819	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6842216	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855321	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855960	0.80[EUR][1000 genomes]
rs6858741	0.84[AMR][1000 genomes]
rs72651313	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7356310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657871	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659408	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7662940	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672378	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674063	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7674328	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7677150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685459	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7691385	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691765	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7696241	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698393	0.86[EUR][1000 genomes]
rs9942164	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1003516	chr4:76597112-76729576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv537143	chr4:76597112-76729576	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76599600-76647600	Weak transcription	Fetal Brain Female	brain
2	chr4:76623800-76647600	Weak transcription	Fetal Heart	heart
3	chr4:76624400-76647200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:76624400-76647800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:76624600-76646800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:76624800-76647600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:76631000-76643600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:76631000-76648800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:76631600-76648000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:76633600-76643800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:76633600-76647000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:76633600-76648200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:76633800-76643600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:76633800-76648000	Weak transcription	Fetal Kidney	kidney
15	chr4:76634000-76647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:76634000-76647800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:76635200-76644800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:76635400-76648200	Weak transcription	Primary B cells from cord blood	blood
19	chr4:76635600-76643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:76636400-76643600	Weak transcription	HUVEC	blood vessel
21	chr4:76636400-76648600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:76638200-76643600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr4:76639200-76643600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:76640400-76648200	Weak transcription	Stomach Mucosa	stomach
25	chr4:76640600-76643600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:76640800-76643600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr4:76640800-76647200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:76640800-76647200	Weak transcription	Fetal Lung	lung
29	chr4:76640800-76647600	Weak transcription	Fetal Thymus	thymus
30	chr4:76640800-76648200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:76640800-76648200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:76640800-76648400	Weak transcription	Placenta	Placenta
33	chr4:76640800-76648400	Weak transcription	Right Atrium	heart
34	chr4:76640800-76649200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:76640800-76649400	Weak transcription	Lung	lung
36	chr4:76641000-76643600	Weak transcription	HMEC	breast
37	chr4:76641000-76643800	Weak transcription	Pancreas	Pancrea
38	chr4:76641000-76645000	Weak transcription	GM12878-XiMat	blood
39	chr4:76641000-76647000	Weak transcription	A549	lung
40	chr4:76641000-76647400	Weak transcription	Ovary	ovary
41	chr4:76641000-76647600	Weak transcription	Osteobl	bone
42	chr4:76641000-76647800	Weak transcription	Brain Germinal Matrix	brain
43	chr4:76641000-76648000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:76641000-76648200	Weak transcription	Brain Anterior Caudate	brain
45	chr4:76641000-76648200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr4:76641000-76648200	Weak transcription	Fetal Intestine Small	intestine
47	chr4:76641000-76648200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr4:76641200-76644400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:76641200-76646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:76641200-76647200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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