Variant report

Variant	rs324692
Chromosome Location	chr4:76730386-76730387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76695835..76697622-chr4:76727743..76730489,2	K562	blood:
2	chr4:76729458..76731870-chr4:76734156..76736112,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10009902	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10010519	0.80[EUR][1000 genomes]
rs10014281	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10025315	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10028884	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10029110	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11097070	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11729258	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11736474	0.80[EUR][1000 genomes]
rs13116639	0.82[EUR][1000 genomes]
rs13118426	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13119659	0.93[ASN][1000 genomes]
rs13137468	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13138717	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1546539	0.82[EUR][1000 genomes]
rs1548175	0.82[EUR][1000 genomes]
rs1553984	0.89[AMR][1000 genomes]
rs1553986	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs186562	0.81[EUR][1000 genomes]
rs1967495	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1967496	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs226416	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280095	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2869174	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs324682	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324683	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324685	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324689	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324707	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324708	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324711	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324715	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324716	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324717	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324718	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324721	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs324724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324737	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385808	0.86[EUR][1000 genomes]
rs3796473	0.80[EUR][1000 genomes]
rs3796485	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3853183	0.89[AMR][1000 genomes]
rs3853184	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3942252	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4349625	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs436611	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs443952	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859403	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4859543	0.82[EUR][1000 genomes]
rs4859544	0.80[AMR][1000 genomes]
rs4859545	0.82[AMR][1000 genomes]
rs4859546	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4859547	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4859548	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4859550	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5020591	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6419115	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6531841	0.82[EUR][1000 genomes]
rs6531866	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6531867	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6531868	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6531889	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6531902	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6531903	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67474106	0.84[EUR][1000 genomes]
rs6826858	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6827809	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6835702	0.82[EUR][1000 genomes]
rs6835819	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6842216	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6855321	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6855960	0.84[EUR][1000 genomes]
rs72651313	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7356270	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7356310	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7657871	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7659408	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7662940	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7672378	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7674063	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7677150	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7691385	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7691765	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7696241	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7698393	0.89[EUR][1000 genomes]
rs9942164	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76650800-76737800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:76671000-76739400	Weak transcription	Stomach Mucosa	stomach
3	chr4:76676400-76730600	Weak transcription	Spleen	Spleen
4	chr4:76677000-76736200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:76685800-76738400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:76688200-76738200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:76697600-76734400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:76698000-76735400	Weak transcription	Small Intestine	intestine
9	chr4:76705000-76730800	Weak transcription	Fetal Heart	heart
10	chr4:76705800-76730600	Weak transcription	Fetal Brain Female	brain
11	chr4:76706000-76730600	Weak transcription	Aorta	Aorta
12	chr4:76706000-76732000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:76706000-76732000	Weak transcription	Gastric	stomach
14	chr4:76707800-76738600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:76708400-76735400	Weak transcription	Right Ventricle	heart
16	chr4:76712200-76730600	Weak transcription	Brain Angular Gyrus	brain
17	chr4:76712600-76730600	Weak transcription	Brain Germinal Matrix	brain
18	chr4:76712600-76735600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:76713800-76730800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:76715000-76730800	Weak transcription	Pancreas	Pancrea
21	chr4:76715000-76734000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:76715000-76734600	Weak transcription	Esophagus	oesophagus
23	chr4:76716000-76737000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:76718200-76735600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:76720400-76737000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:76720400-76738200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:76720600-76737000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr4:76720600-76737000	Strong transcription	Osteobl	bone
29	chr4:76720600-76737200	Strong transcription	Liver	Liver
30	chr4:76720800-76736600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:76720800-76736800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr4:76720800-76737000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:76720800-76737000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr4:76721000-76736400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:76721000-76736600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:76721000-76737000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:76721200-76736800	Strong transcription	Fetal Intestine Large	intestine
38	chr4:76721400-76737000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr4:76721400-76738200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:76721400-76738200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:76721800-76736800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:76722400-76738400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:76722600-76734200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr4:76722800-76732000	Weak transcription	Colonic Mucosa	Colon
45	chr4:76723200-76730600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr4:76723400-76730800	Weak transcription	Psoas Muscle	Psoas
47	chr4:76724000-76736800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:76724400-76736800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr4:76724800-76737200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:76724800-76738200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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