Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10009902	0.81[EUR][1000 genomes]
rs10028884	0.82[EUR][1000 genomes]
rs10029110	0.81[EUR][1000 genomes]
rs226416	0.82[EUR][1000 genomes]
rs324682	0.89[EUR][1000 genomes]
rs324683	0.90[EUR][1000 genomes]
rs324685	0.82[EUR][1000 genomes]
rs324689	0.84[EUR][1000 genomes]
rs324692	0.84[EUR][1000 genomes]
rs324695	0.84[EUR][1000 genomes]
rs324707	0.82[EUR][1000 genomes]
rs324708	0.82[EUR][1000 genomes]
rs324711	0.82[EUR][1000 genomes]
rs324715	0.82[EUR][1000 genomes]
rs324716	0.82[EUR][1000 genomes]
rs324717	0.82[EUR][1000 genomes]
rs324718	0.82[EUR][1000 genomes]
rs324721	0.82[EUR][1000 genomes]
rs324724	0.84[EUR][1000 genomes]
rs324725	0.84[EUR][1000 genomes]
rs324737	0.84[EUR][1000 genomes]
rs34385808	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853184	0.82[EUR][1000 genomes]
rs436611	0.82[EUR][1000 genomes]
rs443952	0.84[EUR][1000 genomes]
rs5020591	0.82[EUR][1000 genomes]
rs6419115	0.82[EUR][1000 genomes]
rs6531902	0.82[EUR][1000 genomes]
rs6531903	0.82[EUR][1000 genomes]
rs6835819	0.82[EUR][1000 genomes]
rs6842216	0.82[EUR][1000 genomes]
rs6855321	0.82[EUR][1000 genomes]
rs72651313	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76736600-76763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:76736800-76753000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:76737000-76753000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:76737600-76751000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:76738200-76753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:76738400-76751800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:76743800-76764800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:76745600-76749800	Weak transcription	A549	lung
9	chr4:76745800-76752400	Weak transcription	Ovary	ovary

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