Variant report

Variant	rs11097069
Chromosome Location	chr4:76622063-76622064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76620008..76622936-chr4:76627662..76629475,2	K562	blood:
2	chr4:76598661..76600243-chr4:76621587..76623214,2	K562	blood:

Variant related genes	Relation type
ENSG00000138757	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10014281	0.81[EUR][1000 genomes]
rs10025315	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11097070	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11729258	0.81[EUR][1000 genomes]
rs11736474	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13116639	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13118426	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13133699	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13137468	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13138717	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1464070	0.83[EUR][1000 genomes]
rs1464071	0.83[EUR][1000 genomes]
rs1546539	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1548175	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1553984	0.90[EUR][1000 genomes]
rs1553986	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1828629	0.81[EUR][1000 genomes]
rs1967495	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1967496	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280095	0.81[EUR][1000 genomes]
rs3796473	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3796485	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3796488	0.83[EUR][1000 genomes]
rs3853183	0.90[EUR][1000 genomes]
rs3942252	0.81[EUR][1000 genomes]
rs4349625	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859403	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859542	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4859543	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859544	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859545	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859546	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859547	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859548	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859550	0.81[EUR][1000 genomes]
rs6531778	0.83[EUR][1000 genomes]
rs6531841	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6531866	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6531867	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6531868	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6531871	0.81[AMR][1000 genomes]
rs6531889	0.81[EUR][1000 genomes]
rs6826858	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6827809	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6828365	0.82[AMR][1000 genomes]
rs6832912	0.84[EUR][1000 genomes]
rs6835702	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6858741	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7356270	0.81[EUR][1000 genomes]
rs7356310	0.81[EUR][1000 genomes]
rs7657871	0.81[EUR][1000 genomes]
rs7659408	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7662940	0.81[EUR][1000 genomes]
rs7672378	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7674328	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7677150	0.81[EUR][1000 genomes]
rs7685459	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7691385	0.81[EUR][1000 genomes]
rs7691765	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7696241	0.81[EUR][1000 genomes]
rs9942164	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1003516	chr4:76597112-76729576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv537143	chr4:76597112-76729576	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76599200-76640000	Weak transcription	Aorta	Aorta
2	chr4:76599600-76623400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:76599600-76624000	Weak transcription	Brain Substantia Nigra	brain
4	chr4:76599600-76639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:76599600-76639800	Weak transcription	Brain Angular Gyrus	brain
6	chr4:76599600-76639800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:76599600-76647600	Weak transcription	Fetal Brain Female	brain
8	chr4:76599800-76627800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:76600400-76640000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:76600600-76627000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:76605800-76623400	Weak transcription	K562	blood
12	chr4:76605800-76633200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:76607400-76640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:76612600-76622200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:76613000-76623400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:76613200-76627800	Weak transcription	A549	lung
17	chr4:76613400-76623400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:76613800-76639000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:76613800-76639600	Weak transcription	Ovary	ovary
20	chr4:76614600-76630200	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:76614800-76628200	Weak transcription	Gastric	stomach
22	chr4:76615600-76639800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:76615600-76639800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:76615800-76639000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:76616000-76640000	Weak transcription	Lung	lung
26	chr4:76616200-76630200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:76618200-76635000	Weak transcription	Adipose Nuclei	Adipose
28	chr4:76618400-76639000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:76618600-76623600	Weak transcription	Thymus	Thymus
30	chr4:76619000-76623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:76619400-76633400	Weak transcription	Fetal Kidney	kidney
32	chr4:76619600-76630400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:76620000-76630400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:76620000-76640000	Weak transcription	Brain Germinal Matrix	brain
35	chr4:76620200-76622200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:76620200-76622600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:76620200-76623600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:76620200-76627600	Weak transcription	Liver	Liver
39	chr4:76620200-76627800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:76620200-76627800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:76620400-76622200	Enhancers	Primary B cells from cord blood	blood
42	chr4:76620400-76622200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr4:76620400-76622200	Enhancers	Colon Smooth Muscle	Colon
44	chr4:76620400-76622200	Enhancers	Fetal Heart	heart
45	chr4:76620400-76622200	Enhancers	Fetal Intestine Large	intestine
46	chr4:76620400-76622400	Enhancers	Fetal Thymus	thymus
47	chr4:76620400-76627800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr4:76620400-76630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:76620400-76630600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:76620400-76639600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links