Variant report

Variant	rs1915541
Chromosome Location	chr8:119605603-119605604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505340	0.83[LWK][hapmap]
rs10505341	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs1607924	0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1915542	0.81[CHB][hapmap]
rs2460962	0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2514583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2514584	0.86[ASN][1000 genomes]
rs2514588	0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2514589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2514590	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1915541	TRPS1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119600200-119610600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:119600600-119622600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:119604600-119605800	Enhancers	Fetal Intestine Small	intestine
4	chr8:119605600-119610400	Weak transcription	GM12878-XiMat	blood
5	chr8:119605600-119613200	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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