Variant report

Variant	rs2460962
Chromosome Location	chr8:119598072-119598073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1607924	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1915541	0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2460960	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2514582	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap]
rs2514587	0.84[CHB][hapmap]
rs2514588	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514589	0.81[EUR][1000 genomes]
rs2514590	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119585800-119602400	Weak transcription	Pancreas	Pancrea
2	chr8:119586000-119599200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:119587400-119599600	Weak transcription	Left Ventricle	heart
4	chr8:119590600-119599200	Weak transcription	GM12878-XiMat	blood
5	chr8:119595000-119602600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:119597400-119598200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:119597400-119599600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:119598000-119598200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:119598000-119598200	Enhancers	Brain Angular Gyrus	brain
10	chr8:119598000-119598400	Enhancers	Right Ventricle	heart
11	chr8:119598000-119598800	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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