Variant report

Variant	rs1916551
Chromosome Location	chr10:57506658-57506659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTRNR2L5-5	chr10:57506311-57506668	NONHSAT013465

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10509040	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10733937	0.97[ASN][1000 genomes]
rs10733938	0.96[ASN][1000 genomes]
rs10740626	0.97[ASN][1000 genomes]
rs10740627	0.94[ASN][1000 genomes]
rs10740628	0.97[ASN][1000 genomes]
rs10740630	0.97[ASN][1000 genomes]
rs10740631	0.97[ASN][1000 genomes]
rs10740632	0.99[ASN][1000 genomes]
rs10740633	0.99[ASN][1000 genomes]
rs10763223	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10763250	0.95[ASN][1000 genomes]
rs10763251	0.95[ASN][1000 genomes]
rs10763253	0.97[ASN][1000 genomes]
rs10763254	0.99[ASN][1000 genomes]
rs10763255	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825589	0.97[ASN][1000 genomes]
rs10825590	0.97[ASN][1000 genomes]
rs10825591	0.97[ASN][1000 genomes]
rs10825592	0.95[ASN][1000 genomes]
rs10825593	0.97[ASN][1000 genomes]
rs10825594	0.95[ASN][1000 genomes]
rs10825595	0.97[ASN][1000 genomes]
rs10825596	0.93[ASN][1000 genomes]
rs10825597	0.93[ASN][1000 genomes]
rs10825607	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11004993	0.92[ASN][1000 genomes]
rs11004996	0.97[ASN][1000 genomes]
rs12243873	0.99[ASN][1000 genomes]
rs1880070	0.90[ASN][1000 genomes]
rs1916518	0.87[ASN][1000 genomes]
rs1916550	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1916552	0.99[ASN][1000 genomes]
rs1916553	0.99[ASN][1000 genomes]
rs1916554	0.99[ASN][1000 genomes]
rs1916555	0.99[ASN][1000 genomes]
rs1916556	0.99[ASN][1000 genomes]
rs1916557	0.99[ASN][1000 genomes]
rs1917824	0.97[ASN][1000 genomes]
rs2140402	0.97[ASN][1000 genomes]
rs2140403	0.97[ASN][1000 genomes]
rs2177366	0.97[ASN][1000 genomes]
rs2177367	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4117799	0.97[ASN][1000 genomes]
rs4271301	0.99[ASN][1000 genomes]
rs4275527	0.99[ASN][1000 genomes]
rs4385798	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4567361	0.99[ASN][1000 genomes]
rs4568907	0.99[ASN][1000 genomes]
rs4572048	0.99[ASN][1000 genomes]
rs4935600	0.90[ASN][1000 genomes]
rs7067853	0.96[ASN][1000 genomes]
rs7074747	0.97[ASN][1000 genomes]
rs7079741	0.97[ASN][1000 genomes]
rs7096970	0.97[ASN][1000 genomes]
rs7098259	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7475472	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7904769	0.97[ASN][1000 genomes]
rs7921803	0.99[ASN][1000 genomes]
rs7921903	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040047	chr10:57007182-57979747	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv895480	chr10:57120283-57539172	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2761598	chr10:57143239-57656115	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1053051	chr10:57252816-57638793	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1041500	chr10:57317208-57638793	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv428558	chr10:57383256-57524282	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv895490	chr10:57390762-57506658	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1038010	chr10:57394631-57627820	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv540643	chr10:57394631-57627820	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv895492	chr10:57401749-57521574	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv895493	chr10:57401749-57539172	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv467255	chr10:57409695-57537162	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv551052	chr10:57409695-57537162	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv516121	chr10:57438407-57728708	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1038525	chr10:57439194-57727917	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1035651	chr10:57439194-57731104	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv895496	chr10:57442129-57611683	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv895497	chr10:57442672-57611683	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1042161	chr10:57456215-57696091	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv540644	chr10:57456215-57696091	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1036127	chr10:57470352-57727983	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1051512	chr10:57470352-58026988	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv540645	chr10:57470352-58026988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv1049079	chr10:57498545-57668664	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv982905	chr10:57501698-57508960	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
26	nsv831881	chr10:57504989-57696340	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57500800-57506800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:57506200-57507400	Enhancers	Liver	Liver
3	chr10:57506400-57507600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:57506600-57507600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:57506600-57507600	Enhancers	HUES48 Cell Line	embryonic stem cell

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