Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11132912	0.86[ASN][1000 genomes]
rs12500736	0.85[ASN][1000 genomes]
rs12500769	0.86[ASN][1000 genomes]
rs1406510	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1406511	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1406512	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1919492	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1919493	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1919494	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1919495	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2222788	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2332359	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2332360	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3857031	0.83[ASN][1000 genomes]
rs3902945	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4235032	0.88[ASN][1000 genomes]
rs4392474	0.88[ASN][1000 genomes]
rs4692893	0.86[ASN][1000 genomes]
rs6830858	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6848414	0.82[ASN][1000 genomes]
rs7667025	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7674432	0.82[ASN][1000 genomes]
rs7676438	0.82[ASN][1000 genomes]
rs7676453	0.82[ASN][1000 genomes]
rs7688547	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7689150	0.82[ASN][1000 genomes]
rs9993048	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026605	chr4:172405998-172506536	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172504400-172506000	ZNF genes & repeats	GM12878-XiMat	blood
2	chr4:172505000-172506000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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