Variant report

Variant	rs3857031
Chromosome Location	chr4:172524525-172524526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10025346	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11132910	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11132911	1.00[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11132912	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12500736	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12500769	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1406510	0.84[ASN][1000 genomes]
rs1406511	0.83[ASN][1000 genomes]
rs1406512	0.84[ASN][1000 genomes]
rs1919492	0.91[ASN][1000 genomes]
rs1919493	0.92[ASN][1000 genomes]
rs1919494	0.92[ASN][1000 genomes]
rs1919495	0.87[ASN][1000 genomes]
rs1919496	0.83[ASN][1000 genomes]
rs2222788	0.84[ASN][1000 genomes]
rs2332359	0.87[ASN][1000 genomes]
rs2332360	0.92[ASN][1000 genomes]
rs3902945	0.87[ASN][1000 genomes]
rs4235032	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4392474	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692892	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4692893	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6830858	0.84[ASN][1000 genomes]
rs6848414	0.84[ASN][1000 genomes]
rs7667025	0.85[ASN][1000 genomes]
rs7674432	0.84[ASN][1000 genomes]
rs7676438	0.84[ASN][1000 genomes]
rs7676453	0.84[ASN][1000 genomes]
rs7688547	0.90[ASN][1000 genomes]
rs7689150	0.84[ASN][1000 genomes]
rs9993048	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172524400-172525000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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