Variant report

Variant	rs1920064
Chromosome Location	chr3:116154280-116154281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16824930	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1713005	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1731607	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1795283	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1795284	0.82[ASN][1000 genomes]
rs1920192	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34073129	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6783360	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9822445	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838639	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9869410	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116143400-116161200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:116143600-116161000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:116144000-116155800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:116144200-116159000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:116144200-116159000	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:116144200-116160400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:116144200-116160400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:116152400-116157800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:116152800-116161000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:116152800-116161200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:116152800-116161400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:116153200-116161200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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