Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10804523	0.90[CEU][hapmap]
rs1367772	0.85[CEU][hapmap]
rs1623237	0.90[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes]
rs16824930	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1713005	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795283	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795284	0.83[ASN][1000 genomes]
rs1920064	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1920184	0.90[CEU][hapmap];0.81[CHD][hapmap]
rs1920190	0.90[CEU][hapmap]
rs1920192	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2033406	0.89[CEU][hapmap]
rs34073129	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831131	0.90[CEU][hapmap]
rs6783360	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9822445	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9823782	0.90[CEU][hapmap]
rs9838639	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9869410	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870357	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116142200-116144200	Enhancers	Stomach Mucosa	stomach
2	chr3:116143000-116144200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116143000-116144200	Enhancers	Brain Angular Gyrus	brain
4	chr3:116143000-116144400	Enhancers	Brain Substantia Nigra	brain
5	chr3:116143200-116144200	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:116143200-116144200	Enhancers	Brain Hippocampus Middle	brain
7	chr3:116143200-116144200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:116143400-116144400	Enhancers	Colon Smooth Muscle	Colon
9	chr3:116143400-116161200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:116143600-116161000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:116144000-116148400	Weak transcription	Brain Anterior Caudate	brain
12	chr3:116144000-116155800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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