Variant report

Variant	rs1920184
Chromosome Location	chr3:116126476-116126477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1073924	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10804523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12488406	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12492517	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1367772	0.95[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs1623237	0.90[CEU][hapmap]
rs1731607	0.90[CEU][hapmap];0.81[CHD][hapmap]
rs1920186	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920190	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1920191	0.80[CEU][hapmap]
rs2033406	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4831130	0.80[CEU][hapmap]
rs4831131	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6786250	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9822445	0.95[CEU][hapmap]
rs9823782	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs9869410	0.95[CEU][hapmap];0.83[CHD][hapmap]
rs9870357	1.00[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:116119800-116133600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:116122000-116127200	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:116124400-116129200	Weak transcription	Brain Anterior Caudate	brain
8	chr3:116124600-116133600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:116124800-116127600	Weak transcription	Brain Substantia Nigra	brain
10	chr3:116125200-116128800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:116126000-116126600	Enhancers	Brain Angular Gyrus	brain
12	chr3:116126200-116126600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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