Variant report

Variant	rs9823782
Chromosome Location	chr3:116040284-116040285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116038102..116041332-chr3:116053256..116055932,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1030577	0.83[JPT][hapmap]
rs1073924	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10804523	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11924642	0.83[JPT][hapmap]
rs11928524	0.83[JPT][hapmap]
rs12488406	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12492517	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13073414	0.83[JPT][hapmap]
rs13323946	0.83[JPT][hapmap]
rs1367770	0.83[JPT][hapmap]
rs1367772	0.95[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1623237	0.90[CEU][hapmap]
rs16824787	0.83[JPT][hapmap]
rs1731607	0.90[CEU][hapmap]
rs17647091	0.83[JPT][hapmap]
rs1920184	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1920186	0.90[EUR][1000 genomes]
rs1920190	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1920191	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs2033406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867100	0.83[JPT][hapmap]
rs4831130	0.80[CEU][hapmap]
rs4831131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438315	0.83[JPT][hapmap]
rs6786130	0.83[JPT][hapmap]
rs6786250	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6810089	0.92[JPT][hapmap]
rs7634137	0.83[JPT][hapmap];0.88[MKK][hapmap]
rs9822445	0.95[CEU][hapmap]
rs9861474	0.83[JPT][hapmap]
rs9869410	0.95[CEU][hapmap]
rs9870357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116036200-116041400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:116038400-116048400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:116038600-116041000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:116040200-116041000	Weak transcription	Brain Cingulate Gyrus	brain

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