Variant report

Variant	rs1367772
Chromosome Location	chr3:116037781-116037782
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1073924	0.84[EUR][1000 genomes]
rs10804523	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs12488406	0.85[EUR][1000 genomes]
rs12492517	0.84[EUR][1000 genomes]
rs1623237	0.84[CEU][hapmap]
rs1731607	0.85[CEU][hapmap]
rs1920184	0.95[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs1920186	0.83[EUR][1000 genomes]
rs1920190	0.95[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2033406	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4831131	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs6786250	0.85[EUR][1000 genomes]
rs9822445	0.89[CEU][hapmap]
rs9823782	0.95[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9869410	0.90[CEU][hapmap]
rs9870357	0.95[CEU][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116032400-116038200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:116032600-116040000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:116034200-116038000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:116034400-116038000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:116036200-116041400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:116037200-116038000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:116037200-116038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:116037200-116038400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:116037200-116038400	Enhancers	Brain Angular Gyrus	brain
10	chr3:116037200-116038600	Enhancers	Brain Hippocampus Middle	brain
11	chr3:116037400-116037800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:116037400-116037800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:116037400-116038000	Enhancers	Brain Germinal Matrix	brain
14	chr3:116037600-116039000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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